James: Text replacement - "[pP][bB][sS]" to "SLURM"

2022-10-27T19:49:18Z

Text replacement - "[pP][bB][sS]" to "SLURM"

← Older revision		Revision as of 19:49, 27 October 2022
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	Clemens Lakner, Paul van der Mark, John P Huelsenbeck, Bret Larget, and Fredrik Ronquist. Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics. Systematic biology, 57(1):86--103, February 2008.		Clemens Lakner, Paul van der Mark, John P Huelsenbeck, Bret Larget, and Fredrik Ronquist. Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics. Systematic biology, 57(1):86--103, February 2008.

	'''Use:''' The example ~~PBS~~ script to run the FDPPDIV on PENZIAS is given below		'''Use:''' The example SLURM script to run the FDPPDIV on PENZIAS is given below

	<pre>		<pre>
	#!/bin/bash		#!/bin/bash
	#~~PBS~~ -q production		#SLURM -q production
	#~~PBS~~ -N <name_of_job>		#SLURM -N <name_of_job>
	#~~PBS~~ -l select=1:ncpus=2		#SLURM -l select=1:ncpus=2
	#~~PBS~~ -l place=free		#SLURM -l place=free
	#~~PBS~~ -V		#SLURM -V

	# You must explicitly change to the working directory in ~~PBS~~		# You must explicitly change to the working directory in SLURM
	cd $~~PBS_O_WORKDIR~~		cd $SLURM_O_WORKDIR

	mpirun -np 2 exabayes <input_file> > output_file		mpirun -np 2 exabayes <input_file> > output_file
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	'''<p style="font-size:15px;" >General Notes</p>'''		'''<p style="font-size:15px;" >General Notes</p>'''

	R language has become a de facto standard among statisticians for the development of statistical software, and is widely used for statistical software development and data analysis. R is available on the following HPCC's servers: Karle, Penzias, Appel and Andy. Karle is the only machine where R can be used without submitting jobs to ~~PBS~~ manager. On all other systems users must submit their R jobs via ~~PBS~~ batch scheduler.		R language has become a de facto standard among statisticians for the development of statistical software, and is widely used for statistical software development and data analysis. R is available on the following HPCC's servers: Karle, Penzias, Appel and Andy. Karle is the only machine where R can be used without submitting jobs to SLURM manager. On all other systems users must submit their R jobs via SLURM batch scheduler.
	More information about our installation can be found here [[R]]		More information about our installation can be found here [[R]]
	</div>		</div>

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'''The purpose of this page is to provide an all-inclusive, alphabetical list of available applications, tools, and libraries.''' For information about using modules to run your applications go to Using Modules To Run Your Applications. For a list of applications sorted by academic relevance go to [http://wiki.csi.cuny.edu/cunyhpc/index.php?title=Applications_Index/Academic_relevance Academic Relevance].

2022-10-17T17:44:02Z

Created page with "<div class="noautonum">TOC</div> '''The purpose of this page is to provide an all-inclusive, alphabetical list of available applications, tools, and libraries.''' For information about using modules to run your applications go to Using Modules To Run Your Applications. For a list of applications sorted by academic relevance go to [http://wiki.csi.cuny.edu/cunyhpc/index.php?title=Applications_Index/Academic_relevance Academic Relevance]. <div class="mw-collapsi..."
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James: Text replacement - "[pP][bB][sS]" to "SLURM"