PyRAD

Start up tutorials of the program can be found on following links

http://nbviewer.ipython.org/gist/dereneaton/1f661bfb205b644086cc/tutorial_RAD_3.0.ipynb

and on:

http://nbviewer.ipython.org/gist/dereneaton/af9548ea0e94bff99aa0/pyRAD_v.3.0.ipynb

Every user has to prepare the parameter file (in below example params.txt), which will hold parameters of PyRAD run. The full description of content of this file is given into manual (see above). To run PyRAD job first load module for pyRAD with the command

module load pyrad

Then submit a job with SLURM script. The simple SLURM script which an be used as template for user's job submission script is as follows:

#!/bin/bash
#!/bin/bash
#SBATCH --partition production
#SBATCH --job-name my_job
#SBATCH --nodes=1
#SBATCH --ntasks=1


# change to the working directory 
cd $SLURM_SUBMIT_DIR
echo ">>>> Begin  my_job"

pyRAD -p params.txt

echo">>>> End of a job"

Please check the manual for the command line options (and their meaning) of the pyRAD. .