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• 20:22, 20 October 2022 James talk contribs created page TOPHAT (Created page with "The other tools in this collection, BOWTIE, CUFFLINKS, and SAMTOOLS are also installed at the CUNY HPC Center. Additional information can be found at the TOPHAT home page here [http://tophat.cbcb.umd.edu/index.html]. At the CUNY HPC Center TOPHAT is installed on ANDY. TOPHAT is a parallel threaded code (pthreads) that takes its input from a simple text file provided on the command line. Below is an example SLURM script that will run the mRNA test case provided with t...")